Extremophilic α-Amylases: Structural Adaptations, Discovery Strategies, and Industrial Applications (2020-2025)
Extremophilic α-Amylases: Structural Adaptations and Discovery Strategies
DOI:
https://doi.org/10.54393/fbt.v5i4.199Keywords:
Extremophiles, Enzyme Stability, Metagenomics, Protein Engineering, Industrial Biotechnology, Starch HydrolysisAbstract
The use of the enzyme α-amylases is a large-scale industrial enzyme used in the manufacture of food and beverages, textiles, detergents, paper, pharmaceuticals, and biofuels. Conventional microbial α-amylases, primarily Bacillus and Aspergillus-based ones, have been in use for many years, but their effectiveness is often limited by the harsh conditions of industrial processes. Extremophilic enzymes such as thermophiles, halophiles, acidophiles, alkaliphiles, and psychrophiles are an attractive alternative to resilient α-amylases with exceptional thermostability, pH tolerance, salt resistance, and, in some cases, cold activity. This review sums up recent developments (2020-2025) in the discovery, biochemical characterization, as well as industrial application of extremophilic α-amylases. New culture-independent technologies, such as metagenomics, high-throughput functional screening, and machine learning-guided enzyme mining, are highlighted because they help to increase the number of genes in α-amylases of previously unculturable microorganisms. The discussion is centered on structural and mechanistic understanding concerning enzyme stability with reference to comparison to conventional counterparts. Although considerable advances have been made, there are still several gaps in the exploration of unexplored habitats, structural explanation of identified new enzymes, and cost-effectiveness of industrial applications. A combination of extremophilic scaffolds with protein engineering, synthetic biology, and sustainable fermentation has great potential for the realization of tailored α-amylases to serve advanced bioprocesses. The advances make extremophilic α-amylases an important source of industrial biotechnology innovation.
References
Feller G, Bonneau M, Da Lage JL. Amyrel, A Novel Glucose-Forming Α-Amylase from Drosophila with 4-Α-Glucanotransferase Activity by Disproportionation and Hydrolysis of Maltooligosaccharides. Glycobiology. 2021 Sep; 31(9): 1134-44. doi: 10.1093/glycob/cwab036.
Prongjit D, Lekakarn H, Bunterngsook B, Aiewviriyasakul K, Sritusnee W, Champreda V. Functional Characterization of Recombinant Raw Starch Degrading Α-Amylase from Roseateles Terrae HL11 and Its Application on Cassava Pulp Saccharification. Catalysts. 2022 Jun; 12(6): 647. doi: 10.3390/catal12060647
Verified Market Reports. Alpha-Amylase Market Size, Share, Industry Analysis and Forecast. 2025. Available from: https://www.verifiedmarketreports.com/product/alpha-amylase-market.
Rehman A, Saeed A, Asad W, Khan I, Hayat A, Rehman MU et al. Eco-friendly Textile Desizing with Indigenously Produced Amylase from Bacillus Cereus AS2. Scientific Reports. 2023 Jul; 13(1): 11991. doi: 10.1038/s41598-023-38956-3.
Nguyen VM, Ndao A, Peterson EC, Blais JF, Adjallé K. Bacillus Species: Evolving Roles in Bio-Based Detergents. Processes. 2025 Jun; 13(6): 1885. doi: 10.3390/pr13061885.
Tadesse M, Liu Y. Recent Advances in Enzyme Immobilization: The Role of Artificial Intelligence, Novel Nanomaterials, and Dynamic Carrier Systems. Catalysts. 2025 Jun; 15(6): 571. doi: 10.3390/catal15060571.
Marzban G, Tesei D. The Extremophiles: Adaptation Mechanisms and Biotechnological Applications. Biology. 2025 Apr; 14(4): 412. doi: 10.3390/biology14040412.
Rekadwad BN, Li WJ, Gonzalez JM, Punchappady Devasya R, Ananthapadmanabha Bhagwath A, Urana R et al. Extremophiles: The Species That Evolve and Survive Under Hostile Conditions. 3 Biotech. 2023 Sep; 13(9): 316. doi: 10.1007/s13205-023-03733-6.
Sepe F, Costanzo E, Ionata E, Marcolongo L. Biotechnological Potential of Extremophiles: Environmental Solutions, Challenges, and Advancements. Biology. 2025 Jul; 14(7): 847. doi: 10.3390/biology14070847.
Kuddus M, Roohi, Bano N, Sheik GB, Joseph B, Hamid B et al. Cold‐active microbial enzymes and their biotechnological applications. Microbial Biotechnology. 2024 Apr; 17(4): e14467. doi: 10.1111/1751-7915.14467.
Kholikov A, Vokhidov K, Murtozoyev A, Tóth ZS, Nagy GN, Vértessy BG et al. Characterization of a Thermostable α-Amylase from Bacillus licheniformis 104. K for Industrial Applications. Microorganisms. 2025 Jul; 13(8): 1757. doi: 10.3390/microorganisms13081757.
Nam NN, Do HD, Loan Trinh KT, Lee NY. Metagenomics: An Effective Approach for Exploring Microbial Diversity and Functions. Foods. 2023 May; 12(11): 2140. doi: 10.3390/foods12112140.
Yiping SH, Nan LI, Zongqiang WA. Recent Advances in the Culture-Independent Discovery of Natural Products Using Metagenomic Approaches. Chinese Journal of Natural Medicines. 2024 Feb; 22(2): 100-11. doi: 10.1016/S1875-5364(24)60585-6.
Van der Flier F, Estell D, Pricelius S, Dankmeyer L, Van Stigt Thans S, Mulder H et al. Enzyme Structure Correlates with Variant Effect Predictability. Computational and Structural Biotechnology Journal. 2024 Dec; 23: 3489-97. doi: 10.1016/j.csbj.2024.09.007.
Gómez-Villegas P, Vigara J, Romero L, Gotor C, Raposo S, Gonçalves B, Léon R. Biochemical Characterization of the Amylase Activity from the New Haloarchaeal Strain Haloarcula sp. Hs Isolated in the Odiel Marshlands. Biology. 2021 Apr; 10(4): 337. doi: 10.3390/biology10040337.
Lahiri D, Nag M, Banerjee R, Mukherjee D, Garai S, Sarkar T et al. Amylases: biofilm inducer or biofilm inhibitor? Frontiers in Cellular and Infection Microbiology. 2021 Apr; 11: 660048. doi: 10.3389/fcimb.2021.660048.
Abedi E, Kaveh S, Hashemi SM. Structure-Based Modification of A-Amylase by Conventional and Emerging Technologies: Comparative Study on the Secondary Structure, Activity, Thermal Stability and Amylolysis Efficiency. Food Chemistry. 2024 Mar; 437: 137903. doi: 10.1016/j.foodchem.2023.137903.
Huma T, Mustafa G, Sethi A, Maryam A, Ali M. Computational Approach to Study Role of Active Site Amino Acids of Alpha-Amylases in Thermostability of Pyrococcus fu-riosus and Bacillus sp. Biochemistry and Molecular Biology Journal. 2021.
Samanta S. Structural and Catalytical Features of Different Amylases and their Potential Applications. Jordan Journal of Biological Sciences. 2022 Jun; 15(2). doi: 10.54319/jjbs/150220.
Ramakrishnan K, Johnson RL, Winter SD, Worthy HL, Thomas C, Humer DC et al. Glycosylation Increases Active Site Rigidity Leading to Improved Enzyme Stability and Turnover. The Federation of European Biochemical Societies Journal. 2023 Aug; 290(15): 3812-27. doi: 10.1111/febs.16783.
Tagomori BY, Dos Santos FC, Barbosa-Tessmann IP. Recombinant Expression, Purification, and Characterization of an Α-Amylase from Massilia Timonae. 3 Biotech. 2021 Jan; 11(1): 13. doi: 10.1007/s13205-020-02505-w.
Sidar A, Albuquerque ED, Voshol GP, Ram AF, Vijgenboom E, Punt PJ. Carbohydrate Binding Modules: Diversity of Domain Architecture in Amylases and Cellulases from Filamentous Microorganisms. Frontiers in Bioengineering and Biotechnology. 2020 Jul; 8: 871. doi: 10.3389/fbioe.2020.00871.
Ahmad A, Rahamtullah, Mishra R. Structural and Functional Adaptation in Extremophilic Microbial a-Amylases. Biophysical Reviews. 2022 Apr; 14(2): 499-515. doi: 10.1007/s12551-022-00931-z.
Amils R, Ellis-Evans C, Hinghofer-Szalkay H. Life in extreme environments. New York, NY, USA: Springer. 2007 Sep. doi: 10.1007/978-1-4020-6285-8.
Jaiswal N and Jaiswal P. Thermostable α-Amylases and Laccases: Paving the Way for Sustainable Industrial Applications. Processes. 2024 Jun; 12(7): 1341. doi: 10.3390/pr12071341.
Khan MF. Recent Advances in Microbial Enzyme Applications for Sustainable Textile Processing and Waste Management. Science. 2025 Apr; 7(2): 46. doi: 10.3390/sci7020046.
Burkhardt C, Baruth L, Meyer-Heydecke N, Klippel B, Margaryan A, Paloyan A et al. Mining Thermophiles for Biotechnologically Relevant Enzymes: Evaluating the Potential of European and Caucasian Hot Springs. Extremophiles. 2024 Apr; 28(1): 5. doi: 10.1007/s00792-023-01321-3.
Kim JA, Kim MJ, Yim JH, Kim IC, Rhee JS, Han SJ. Isolation and Characterization of Low-Temperature and High-Salinity Amylase from Halomonas sp. KS41843. Fermentation. 2025 Aug; 11(8): 465. doi: 10.3390/fermentation11080465.
Yandri Y, Tiarsa ER, Suhartati T, Satria H, Irawan B, Hadi S. The Stability Improvement of α‐Amylase Enzyme from Aspergillus fumigatus by Immobilization on a Bentonite Matrix. Biochemistry Research International. 2022; 2022(1): 3797629. doi: 10.1155/2022/3797629.
Valenzuela B, Solís-Cornejo F, Araya R, Zamorano P. Isolation of Thermophilic Bacteria from Extreme Environments in Northern Chile. Microorganisms. 2024 Feb; 12(3): 473. doi: 10.3390/microorganisms12030473.
Dutta B and Bandopadhyay R. Biotechnological Potentials of Halophilic Microorganisms and Their Impact on Mankind. Beni-Suef University Journal of Basic and Applied Sciences. 2022 May; 11(1): 75. doi: 10.1186/s43088-022-00252-w.
Khan MA, Sahile AA, Jan R, Asaf S, Hamayun M, Imran M et al. Halotolerant Bacteria Mitigate the Effects of Salinity Stress on Soybean Growth by Regulating Secondary Metabolites and Molecular Responses. BioMed Central Plant Biology. 2021 Apr; 21(1): 176. doi: 10.1186/s12870-021-02937-3.
Mainka T, Weirathmüller D, Herwig C, Pflügl S. Potential Applications of Halophilic Microorganisms for Biological Treatment of Industrial Process Brines Contaminated with Aromatics. Journal of Industrial Microbiology and Biotechnology. 2021 Apr; 48(1-2): kuab015. doi: 10.1093/jimb/kuab015.
Neagu S, Stancu MM. Novel Halotolerant Bacteria from Saline Environments: Isolation and Biomolecule Production. BioTech. 2025 Jun; 14(2): 49. doi: 10.3390/biotech14020049.
Zhu D, Adebisi WA, Ahmad F, Sethupathy S, Danso B, Sun J. Recent Development of Extremophilic Bacteria and Their Application in Biorefinery. Frontiers in Bioengineering and Biotechnology. 2020 Jun; 8: 483. doi: 10.3389/fbioe.2020.00483.
González E, Vera F, Scott F, Guerrero C, Bolívar JM, Aroca G et al. Acidophilic Heterotrophs: Basic Aspects and Technological Applications. Frontiers in Microbiology. 2024 May; 15: 1374800. doi: 10.3389/fmicb.2024.1374800.
Kumari M, Padhi S, Sharma S, Phukon LC, Singh SP, Rai AK. Biotechnological Potential of Psychrophilic Microorganisms as the Source of Cold-Active Enzymes in Food Processing Applications. 3 Biotech. 2021 Nov; 11(11): 479. doi: 10.1007/s13205-021-03008-y.
Liu Y, Zhang N, Ma J, Zhou Y, Wei Q, Tian C et al. Advances in Cold-Adapted Enzymes Derived from Microorganisms. Frontiers in Microbiology. 2023 Apr; 14: 1152847. doi: 103389/fmicb.2023.1152847.
Casillo A, D’Angelo C, Parrilli E, Tutino ML, Corsaro MM. Membrane and Extracellular Matrix Glycopolymers of Colwellia Psychrerythraea 34H: Structural Changes at Different Growth Temperatures. Frontiers in Microbiology. 2022 Feb; 13: 820714. doi: 10.3389/fmicb.2022.820714.
Ullah I, Khan MS, Khan SS, Ahmad W, Zheng L, Shah SU et al. Identification and Characterization of Thermophilic Amylase Producing Bacterial Isolates from the Brick Kiln Soil. Saudi Journal of Biological Sciences. 2021 Jan; 28(1): 970-9. doi: 10.1016/j.sjbs.2020.11.017.
Arfah RA, Sarlan S, Karim A, Anita A, Ahmad A, Taba P et al. Systematic Review on Isolation, Purification, Characterization, and Industrial Applications of Thermophilic Microbial α-Amylases. Karbala International Journal of Modern Science. 2024; 10(3): 6. doi: 10.33640/2405-609X.3367.
Gupta N, Beliya E, Paul JS, Tiwari S, Kunjam S, Jadhav SK. Molecular Strategies to Enhance Stability and Catalysis of Extremophile-Derived Α-Amylase Using Computational Biology. Extremophiles. 2021 May; 25(3): 221-33. doi: 10.1007/s00792-021-01223-2.
Zhang H, Zhang F, Wu F, Guo L, Xu X. Purification and Characterization of Endogenous α-Amylase from Glutinous Rice Flour. Foods. 2025 May; 14(10): 1679. doi: 10.3390/foods14101679.
Tincu CE, Bouhadiba B, Atanase LI, Stan CS, Popa M, Ochiuz L. An Accessible Method to Improve the Stability and Reusability of Porcine Pancreatic Α-Amylase Via Immobilization in Gellan-Based Hydrogel Particles Obtained by Ionic Cross-Linking with Mg2+ Ions. Molecules. 2023 Jun; 28(12): 4695. doi: 10.3390/molecules28124695.
Atif F, Maqsood N, Ali W, Ali W, Irfan M. Extremophiles and Their Enzymatic Diversity and Biotechnological Potential. Systems Microbiology and Biomanufacturing. 2024 Jul; 4(3): 833-49. doi: 10.1007/s43393-024-00275-7.
Ortega-Quintanilla G and Millet O. On the Molecular Basis of the Hypersaline Adaptation of Halophilic Proteins. Journal of Molecular Biology. 2025 Sep: 169439. doi: 10.1016/j.jmb.2025.169439.
Tenchov R and Zhou QA. Extremophiles: Unlocking Bioactive Compounds and Biotechnological Innovation from Life at the Edge. 2025. doi: 10.26434/chemrxiv-2025-t7lqf.
Baroroh U, Yusuf M, Rachman SD, Ishmayana S, Syamsunarno MR, Levita J et al. The Importance of Surface‐Binding Site towards Starch‐Adsorptivity Level in α‐Amylase: A Review on Structural Point of View. Enzyme Research. 2017; 2017(1): 4086845. doi: 10.1155/2017/4086845.
Kumar A, Dhiman S, Krishan B, Samtiya M, Kumari A, Pathak N et al. Microbial Enzymes and Major Applications in the Food Industry: A Concise Review. Food Production, Processing and Nutrition. 2024 Oct; 6(1): 85. doi: 10.1186/s43014-024-00261-5.
Far BE, Ahmadi Y, Khosroshahi AY, Dilmaghani A. Microbial alpha-Amylase Production: Progress, Challenges and Perspectives. Advanced Pharmaceutical Bulletin. 2020 May; 10(3): 350. doi: 10.34172/apb.2020.043.
Rashwan AK, Younis HA, Abdelshafy AM, Osman AI, Eletmany MR, Hafouda MA et al. Plant Starch Extraction, Modification, and Green Applications: A Review. Environmental Chemistry Letters. 2024 Oct; 22(5): 2483-530. doi: 10.1007/s10311-024-01753-z.
Aydin D. Enzymes in Textile Industry: Towards to Sustainable Textile Processes. Trends in Text, Engineering, Fashion, and Technology [Internet]. 2023 Jul; 8(5). doi: 10.31031/TTEFT.2023.08.000697.
Hamid B, Bashir Z, Yatoo AM, Mohiddin F, Majeed N, Bansal M et al. Cold-Active Enzymes and Their Potential Industrial Applications—A Review. Molecules. 2022 Sep; 27(18): 5885. doi: 10.3390/molecules27185885.
Kumar A, Mukhia S, Kumar R. Industrial Applications of Cold-Adapted Enzymes: Challenges, Innovations and Future Perspective. 3 Biotech. 2021 Oct; 11(10): 426. doi: 10.1007/s13205-021-02929-y.
Vučurović V, Katanski A, Vučurović D, Bajić B, Dodić S. Simultaneous Saccharification and Fermentation of Wheat Starch for Bioethanol Production. Fermentation. 2025 Feb; 11(2): 80. doi: 10.3390/fermentation11020080.
Liu F, Zheng X, Liao W, Ren X, Ma C, Zhang G et al. Heterologous Expression and Biochemical Characterization of a New α-Amylase from Nocardiopsis aegyptia HDN19-252 of Antarctic Animal Origin. Marine Drugs. 2025 Apr; 23(4): 159. doi: 10.3390/md23040159.
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