Insilico Insights into Resveratrol as a Potential Inhibitor of Mycobacterium Tuberculosis Enoyl-ACP Reductase (InhA) Protein
Insilico Insights into Mycobacterium Tuberculosis Enoyl-ACP Reductase
DOI:
https://doi.org/10.54393/fbt.v4i03.134Keywords:
Mycobacterium Tuberculosis, Resveratrol, Insilico, Drug, Enoyl-ACP ReductaseAbstract
Mycobacterium tuberculosis, the causative agent of tuberculosis, is a global cause of death. Thus, the development of innovative treatment strategies is required. Objective: To develop in-silico drugs by phytochemicals to inhibit the Enoyl-ACP reductase (InhA) protein, which is essential for synthesizing mycobacterial cell walls. Methods: The 3D structure of InhA was taken from the Protein Data Bank. The Ramachandran plot validated the model with a score of 98.7% from the favoured Ramachandran plot. Computed Atlas of Surface Topography of Proteins was used to detect the active sites for ligand interaction. Resveratrol were selected based on existing studies and further listed for drug-likeness. Absorption, Distribution, Metabolism, Excretion, and Toxicity analysis showed the possibility of resveratrol as a drug candidate, with no violation of Lipinski rules and excellent absorption in the Gastrointestinal Tract. Results: The boiled egg model confirmed the ability of ligands to go through the blood-brain barrier. Toxicity predictions of resveratrol indicated low risks with several other systems of organs. Molecular docking with CB-Dock2 showed the strong binding of Resveratrol to InhA, with a Vina score equal to -8.8 kcal/mol. Further exploration of the docking complex by molecular docking simulation using the Integrated Management of the Public Distribution System was carried out, and the trajectory confirmed stable interaction and protein flexibility. Conclusions: It was concluded that resveratrol acts as a potent, non-toxic candidate for tuberculosis treatment and highlights its inhibition capacity of InhA. Results need future vitro and in vivo validation to develop this highly reliable therapeutic alternative for combating tuberculosis.
References
Swalehe HM and Obeagu EI. Tuberculosis: Current Diagnosis and Management. Elite Journal of Public Health. 2024; 2(1): 23-33.
Daley CL. The Global Fight Against Tuberculosis. Surgery for Pulmonary Mycobacterial Disease, An Issue of Thoracic Surgery Clinics. 2018 Nov 21;29(1):19-25. doi: 10.1016/j.thorsurg.2018.09.010.
Stillo J. Connecting the DOTS: Should We Still Be Doing Directly Observed Therapy?. Human Organization. 2024 Jan; 83(1): 18-30. doi: 10.1080/00187259.2023.2286173.
Fu L, Deng G, Lu H. Faster, Higher, Stronger: The Evolution of Clinical Perspectives on Pan-TB. One Health & Implementation Research. 2024 Jun; 4(2): 38-52. doi: 10.20517/ohir.2024.03.
Ebenhan T, Lazzeri E, Gheysens O. Imaging of Bacteria: Is There Any Hope for The Future Based On Past Experience? Current Pharmaceutical Design. 2018 Feb; 24(7): 772-86. doi: 10.2174/1381612823666171122111558.
Prasad MS, Bhole RP, Khedekar PB, Chikhale RV. Mycobacterium Enoyl Acyl Carrier Protein Reductase (InhA): A Key Target for Antitubercular Drug Discovery. Bioorganic Chemistry. 2021 Oct; 115: 105242. doi: 10.1016/j.bioorg.2021.105242.
Singh S, Singh D, Hameed S, Fatima Z. An Overview of Mycolic Acids: Structure–Function–Classification, Biosynthesis, and Beyond. Biology of Mycobacterial Lipids. 2022 Jan: 1-25. doi: 10.1016/B978-0-323-91948-7.00016-6.
Belete TM. Recent Progress in The Development of Novel Mycobacterium Cell Wall Inhibitor to Combat Drug-Resistant Tuberculosis. Microbiology Insights. 2022 May; 15: 11786361221099878. doi: 10.1177/11786361221099878.
Ferraz da Costa DC, Pereira Rangel L, Quarti J, Santos RA, Silva JL, Fialho E. Bioactive Compounds and Metabolites from Grapes and Red Wine in Breast Cancer Chemoprevention and Therapy. Molecules. 2020 Aug; 25(15): 3531. doi: 10.3390/molecules25153531.
Abedini E, Khodadadi E, Zeinalzadeh E, Moaddab SR, Asgharzadeh M, Mehramouz B et al. A Comprehensive Study On the Antimicrobial Properties of Resveratrol as an Alternative Therapy. Evidence‐Based Complementary and Alternative Medicine. 2021 Mar; 2021(1): 8866311. doi: 10.1155/2021/8866311.
Naveed M, Ali N, Aziz T, Hanif N, Fatima M, Ali I et al. The Natural Breakthrough: Phytochemicals as Potent Therapeutic Agents Against Spinocerebellar Ataxia Type 3. Scientific Reports. 2024 Jan; 14(1): 1529. doi: 10.1038/s41598-024-51954-3.
Sawal HA, Nighat S, Safdar T, Anees L. Comparative in Silico Analysis and Functional Characterization of TANK-Binding Kinase 1–Binding Protein 1. Bioinformatics and Biology Insights. 2023 Apr; 17: 11779322231164828. doi: 10.1177/11779322231164828.
Dariya B, Muppala S, Srivani G, Momin S, Alam A, Saddala MS. Targeting STAT Proteins Via Computational Analysis in Colorectal Cancer. Molecular and Cellular Biochemistry. 2021 Jan; 476: 165-74. doi: 10.1007/s11010-020-03893-6.
Mitra D and Mohapatra PK. Effect of Natural Compounds to Inhibit Human Respiratory Syncytial Virus. Smart Environmental Science, Technology and Management. 2022; 1: 97-101. doi: 10.36647/978-93-92106-02-6.18.
Mohamed HS, El-Serwy WS, El-Serwy WS. Synthesis, Molecular Docking, In Silico ADME Predictions, and Toxicity Studies of N-Substituted-5-(4-Chloroquinolin-2-Yl)-1, 3, 4-Thiadiazol-2-Amine Derivatives as COVID-19 Inhibitors. Russian Journal of Bioorganic Chemistry. 2021 Jan; 47: 158-65. doi: 10.1134/S1068162021010155.
Naveed M, Abid A, Aziz T, Saleem A, Hanif N, Ali I et al. Comparative Toxicity Assessment of Fisetin-Aided Artificial Intelligence-Assisted Drug Design Targeting Epibulbar Dermoid Through Phytochemicals. Open Chemistry. 2024 May; 22(1): 20230197. doi: 10.1515/chem-2023-0197.
Liu Y and Cao Y. Protein-Ligand Blind Docking Using CB-Dock2. In Computational Drug Discovery and Design. 2023 Sep; 113-125. New York, NY: Springer US. doi: 10.1007/978-1-0716-3441-7_6.
Braz JD and Batista MV. Immunoinformatics-Based Design of Multi-epitope DNA and mRNA Vaccines Against Zika Virus. Bioinformatics and Biology Insights. 2024 May; 18: 11779322241257037. doi: 10.1177/11779322241257037.
Mohinani T, Saxena A, Singh SV. Computational Analysis to Predict Drug Targets for the Therapeutic Management of Mycobacterium avium sub. Paratuberculosis. Current Drug Discovery Technologies. 2023 Jul; 20(4): 73-88. doi: 10.2174/1570163820666230310140613.
Medha, Joshi H, Sharma S, Sharma M. Elucidating the Function of Hypothetical PE_PGRS45 Protein of Mycobacterium Tuberculosis as an Oxido-Reductase: A Potential Target for Drug Repurposing for the Treatment of Tuberculosis. Journal of Biomolecular Structure and Dynamics. 2023 Nov; 41(19): 10009-25. doi: 10.1080/07391102.2022.2151514.
Ibitoye O, Ibrahim MA, Soliman ME. Exploring the Composition of Protein-Ligand Binding Sites for Cancerous Inhibitor of PP2A (CIP2A) By Inhibitor Guided Binding Analysis: Paving A New Way for The Discovery of Drug Candidates Against Triple Negative Breast Cancer (TNBC). Journal of Receptors and Signal Transduction. 2023 Nov; 43(6): 133-43. doi: 10.1080/10799893.2023.2298903.
Pavlović N, Đanić M, Stanimirov B, Goločorbin-Kon S, Stankov K, Lalić-Popović M et al. In Silico Discovery of Resveratrol Analogues as Potential Agents in Treatment of Metabolic Disorders. Current Pharmaceutical Design. 2019 Oct; 25(35): 3776-83. doi: 10.2174/1381612825666191029095252.
Santra D and Maiti S. Molecular Dynamic Simulation Suggests Stronger Interaction of Omicron-Spike with ACE2 Than Wild but Weaker Than Delta SARS-Cov-2 Can Be Blocked by Engineered S1-RBD Fraction. Structural Chemistry. 2022 Oct; 33(5): 1755-69. doi: 10.1007/s11224-022-02022-x.
Singh K, Pandey N, Ahmad F, Upadhyay TK, Islam MH, Alshammari N et al. Identification of Novel Inhibitor Of Enoyl-Acyl Carrier Protein Reductase (Inha) Enzyme In Mycobacterium Tuberculosis From Plant-Derived Metabolites: an in Silico Study. Antibiotics. 2022 Aug; 11(8): 1038. doi: 10.3390/antibiotics11081038.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2024 Futuristic Biotechnology
This work is licensed under a Creative Commons Attribution 4.0 International License.
This is an open-access journal and all the published articles / items are distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. For comments editor@fbtjournal.com